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The deepTools ecosystem

deepTools and related packages

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  1. pyGenomeTracks pyGenomeTracks Public

    python module to plot beautiful and highly customizable genome browser tracks

    Python 894 125

  2. deepTools deepTools Public

    Tools to process and analyze deep sequencing data.

    Python 762 221

  3. HiCExplorer HiCExplorer Public

    HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

    Python 275 75

  4. pyBigWig pyBigWig Public

    A python extension for quick access to bigWig and bigBed files

    C 248 56

  5. py2bit py2bit Public

    A python library for accessing 2bit files

    C 21 9

  6. HiCBrowser HiCBrowser Public

    Simple web browser to visualize HiC tracks

    JavaScript 19 5

Repositories

Showing 10 of 13 repositories
  • deepTools Public

    Tools to process and analyze deep sequencing data.

    deeptools/deepTools’s past year of commit activity
    Python 762 221 162 13 Updated Jul 14, 2026
  • py2bit Public

    A python library for accessing 2bit files

    deeptools/py2bit’s past year of commit activity
    C 21 MIT 9 0 0 Updated Apr 21, 2026
  • pyBigWig Public

    A python extension for quick access to bigWig and bigBed files

    deeptools/pyBigWig’s past year of commit activity
    C 248 MIT 56 11 1 Updated Jan 14, 2026
  • HiCMatrix Public
    deeptools/HiCMatrix’s past year of commit activity
    Python 13 GPL-3.0 8 0 1 Updated Sep 4, 2025
  • HiCExplorer Public

    HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

    deeptools/HiCExplorer’s past year of commit activity
    Python 275 GPL-3.0 75 160 (1 issue needs help) 0 Updated Jul 17, 2025
  • pyGenomeTracks Public

    python module to plot beautiful and highly customizable genome browser tracks

    deeptools/pyGenomeTracks’s past year of commit activity
    Python 894 GPL-3.0 125 27 7 Updated Jul 10, 2024
  • github-actions Public archive

    Play around with github actions

    deeptools/github-actions’s past year of commit activity
    JavaScript 0 MIT 1 0 12 Updated Aug 16, 2023
  • Knight-Ruiz-Matrix-balancing-algorithm Public
    deeptools/Knight-Ruiz-Matrix-balancing-algorithm’s past year of commit activity
    C++ 10 4 5 1 Updated Apr 13, 2021
  • HiCBrowser Public

    Simple web browser to visualize HiC tracks

    deeptools/HiCBrowser’s past year of commit activity
    JavaScript 19 GPL-2.0 5 6 2 Updated Dec 12, 2019
  • hicBuildMatrixCpp Public

    C++ implementation of hicBuildMatrix

    deeptools/hicBuildMatrixCpp’s past year of commit activity
    C++ 2 MIT 2 0 0 Updated Oct 16, 2019
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